# Cell lines: pharma cell-lines

The pharma cell-lines commands, with each dataset's columns, units and source credit.

A cell line listed in the Scientist.com catalog, with its identity-safety status.

Id: The catalog listing's model id (scientist_model_id); not a Cellosaurus accession and not a supplier lot id.

## Commands

| Command | Reads |
| --- | --- |
| pharma cell-lines list | Cell lines |
| pharma cell-lines get <id> | One cell line and the datasets reachable from it |

Every command takes the paging, sorting and output flags described on the CLI page; the CLI prints the source credit with every result.

- [Pharma Observatory CLI](https://pharmaobservatory.com/cli)

## Cell lines

**Command**

```sh
pharma cell-lines list
```

The cell_lines object type's primary dataset: identity and availability with the safety resolution.

One row per: cell line in the Scientist.com catalog. Key columns: `cell_line_id`.

Source: Cellosaurus, SIB Swiss Institute of Bioinformatics (CC BY 4.0)

| Column | Type | Unit | Description |
| --- | --- | --- | --- |
| cell_line_id | text |  | The catalog listing's model id (scientist_model_id). |
| alternate_cell_line_ids | text |  | Other catalog model ids for the same line. |
| model_lot_id | text |  | The lot id. |
| cell_type | text |  | The cell line's name. |
| provider_id | text |  | The supplier's catalog id. |
| supplier | text |  | The supplier as listed. |
| sample_species | text |  | The species. |
| storefront_enable | boolean |  | Whether the listing is enabled in the storefront. |
| mutation_data | text |  | Mutation data as listed. |
| status | text |  | The listing status. |
| safety_status | text |  | confirmed_problematic, review_candidate, no_problematic_match or missing_cell_type. |
| resolution_status | text |  | resolved, unresolved_review, no_match or missing_input. |
| confirmed_problematic | boolean |  | Whether the line is confirmed problematic in Cellosaurus. |
| cellosaurus_accession | text |  | The displayed Cellosaurus accession. |
| cellosaurus_url | text |  | Link to the Cellosaurus entry. |
| problem_category | text |  | The problem category, for a problematic line. |
| problematic_comment | text |  | The Cellosaurus comment, for a problematic line. |
| iclac_registration_ids | text[] |  | International Cell Line Authentication Committee (ICLAC) registration ids. |
| release_version | text |  | The Cellosaurus release the check ran against. |