Cell lines: pharma cell-lines | Pharma Observatory

A cell line listed in the Scientist.com catalog, with its identity-safety status.

Id: The catalog listing's model id (scientist_model_id); not a Cellosaurus accession and not a supplier lot id.

Commands

Cell lines commands
Command	Reads
`pharma cell-lines list`	Cell lines
pharma cell-lines get <id>	One cell line and the datasets reachable from it

Every command takes the paging, sorting and output flags described on the CLI page; the CLI prints the source credit with every result.

pharma cell-lines list

The cell_lines object type's primary dataset: identity and availability with the safety resolution.

Source: Cellosaurus, SIB Swiss Institute of Bioinformatics (CC BY 4.0)

Columns 19

Cell lines columns
Column	Type	Description
cell_line_id	text	The catalog listing's model id (scientist_model_id).
alternate_cell_line_ids	text	Other catalog model ids for the same line.
model_lot_id	text	The lot id.
cell_type	text	The cell line's name.
provider_id	text	The supplier's catalog id.
supplier	text	The supplier as listed.
sample_species	text	The species.
storefront_enable	boolean	Whether the listing is enabled in the storefront.
mutation_data	text	Mutation data as listed.
status	text	The listing status.
safety_status	text	confirmed_problematic, review_candidate, no_problematic_match or missing_cell_type.
resolution_status	text	resolved, unresolved_review, no_match or missing_input.
confirmed_problematic	boolean	Whether the line is confirmed problematic in Cellosaurus.
cellosaurus_accession	text	The displayed Cellosaurus accession.
cellosaurus_url	text	Link to the Cellosaurus entry.
problem_category	text	The problem category, for a problematic line.
problematic_comment	text	The Cellosaurus comment, for a problematic line.
iclac_registration_ids	text[]	International Cell Line Authentication Committee (ICLAC) registration ids.
release_version	text	The Cellosaurus release the check ran against.